Index

A

acquire_opencl_devices() (in module ilpm.simple_cl) apply_basis() (ilpm.path.Path method) (ilpm.path.Tangle method) (in module ilpm.vector)

arb_perp() (in module ilpm.vector) args_unique_rows_threshold() (in module ilpm.networks) as_path() (in module ilpm.path) attach() (ilpm.mesh.Mesh method) azimuthalAverage() (in module ilpm.networks)

B

biot_savart_on_path() (ilpm.path.Path method) BL2BM() (in module ilpm.networks) BL2KL() (in module ilpm.networks) BL2NLandKL() (in module ilpm.networks) BL2PVxydict() (in module ilpm.networks) BL2TRI() (in module ilpm.networks) BM2bL() (in module ilpm.networks) BM2BSM() (in module ilpm.networks)

bond_length_list() (in module ilpm.networks) bond_strain_list() (in module ilpm.networks) bonds_are_in_region() (in module ilpm.networks) boundary_triangles() (in module ilpm.networks) buffer_points_for_periodicBC() (in module ilpm.networks) buffer_points_for_rectangular_periodicBC() (in module ilpm.networks) buffered_pts_to_periodic_network() (in module ilpm.networks) buffered_pts_to_periodic_network_parallelogram() (in module ilpm.networks)

C

cart2pol() (in module ilpm.velocity) cart2sph() (in module ilpm.velocity) center() (ilpm.path.Path method) (ilpm.path.Tangle method) center_of_mass() (in module ilpm.networks) centroid_lattice_from_TRI() (in module ilpm.networks) Cine (class in ilpm.cine) circle() (ilpm.dxf.DXF method) clean_udata() (in module ilpm.velocity) clean_udata_cheap() (in module ilpm.velocity) clear_derived() (ilpm.path.Path method) clip() (ilpm.mesh.Mesh method) close() (ilpm.cine.Cine method) closest_opposed() (ilpm.path.Tangle method) closest_pt_along_line() (in module ilpm.networks) closest_pt_on_lineseg() (in module ilpm.networks) closest_pts_along_line() (in module ilpm.networks) closest_pts_on_lineseg() (in module ilpm.networks) closest_pts_on_lineseg_2D() (in module ilpm.networks) CLSession (class in ilpm.simple_cl) collect_lines() (in module ilpm.networks) color_by_proximity() (ilpm.mesh.Mesh method) (ilpm.path.Path method) (ilpm.path.Tangle method) colorize() (ilpm.mesh.Mesh method) (ilpm.path.Path method) (ilpm.path.Tangle method)

com_periodic() (in module ilpm.networks) compacted_segment_attribute() (ilpm.path.Tangle method) compacted_segments() (ilpm.path.Tangle method) compile() (ilpm.simple_cl.CLSession method) compile_code_in_external_session() (in module ilpm.geometry_extractor) compile_file() (ilpm.simple_cl.CLSession method) compute_bulk_z() (in module ilpm.networks) compute_kolmogorov_lengthscale_simple() (in module ilpm.velocity) compute_signal_loss_due_to_windowing() (in module ilpm.velocity) compute_spatial_autocorr() (in module ilpm.velocity) compute_spatial_autocorr3d() (in module ilpm.velocity) contains_sublist() (in module ilpm.networks) convert_colors() (ilpm.mesh.Mesh method) copy() (ilpm.mesh.Mesh method) (ilpm.path.Path method) count_NN() (in module ilpm.networks) cross() (in module ilpm.vector) cross_pts_triangle() (in module ilpm.networks) crossing_matrix() (ilpm.path.Tangle method) cubic_bezier_resample() (ilpm.path.Path method) curl() (in module ilpm.velocity) curl_2d() (in module ilpm.velocity) cut_bonds() (in module ilpm.networks) cut_bonds_strain() (in module ilpm.networks) cut_bonds_strain_BL() (in module ilpm.networks) cut_bonds_z_highest() (in module ilpm.networks) cut_bonds_z_random() (in module ilpm.networks)

D

decimate() (ilpm.path.Path method) (ilpm.path.Tangle method) decode_ply() (in module ilpm.mesh) decompose_duidxj() (in module ilpm.velocity) default() (ilpm.path.NumpyAwareJSONEncoder method) delaunay_centroid_lattice_from_pts() (in module ilpm.networks) delaunay_centroid_periodic_network_from_pts() (in module ilpm.networks) delaunay_centroid_rect_periodic_network_from_pts() (in module ilpm.networks) delaunay_cut_unnatural_boundary() (in module ilpm.networks) delaunay_cut_unnatural_boundary_singlepass() (in module ilpm.networks) delaunay_lattice_from_pts() (in module ilpm.networks) delaunay_periodic_network_from_pts() (in module ilpm.networks)

delaunay_rect_periodic_network_from_pts() (in module ilpm.networks) diff_matrix() (in module ilpm.networks) display_lattice_2D() (in module ilpm.networks) dist_pts() (in module ilpm.networks) distance_periodic() (in module ilpm.networks) div() (in module ilpm.velocity) dot() (in module ilpm.vector) dot1() (in module ilpm.vector) draw_lattice() (in module ilpm.networks) drop() (ilpm.path.Tangle method) drop_shorter_than() (ilpm.path.Tangle method) DXF (class in ilpm.dxf)

E

eliminate_close_points() (ilpm.path.Path method) (ilpm.path.Tangle method) empty() (ilpm.simple_cl.CLSession method) empty_like() (ilpm.simple_cl.CLSession method) encode_ply() (in module ilpm.mesh) enqueue_copy() (ilpm.simple_cl.CLSession method)

ensure_periodic_connectivity() (in module ilpm.networks) euler_char() (ilpm.mesh.Mesh method) extract_boundary() (in module ilpm.networks) extract_phase() (in module ilpm.networks) extract_polygons_lattice() (in module ilpm.networks) extrude_shape() (in module ilpm.mesh)

F

face_normals() (ilpm.mesh.Mesh method) fft() (ilpm.simple_cl.CLSession method) fft_nd() (in module ilpm.velocity) FileTypeError fill_unphysical_with_sth() (in module ilpm.velocity)

find_cut_bonds() (in module ilpm.networks) find_intersections() (in module ilpm.networks) find_nearest() (in module ilpm.networks) fix_udata_shape() (in module ilpm.velocity) flexible_PVxydict2PVxPVy() (in module ilpm.networks) float2pstr() (in module ilpm.networks)

G

gamma_corrected_frame() (ilpm.cine.Cine method) gen_normal() (ilpm.path.Path method) get_1d_energy_spectrum() (in module ilpm.velocity) get_1d_rescaled_energy_spectrum() (in module ilpm.velocity) get_autocorr_functions() (in module ilpm.velocity) get_autocorr_functions_int_list() (in module ilpm.velocity) get_autocorrelation_tensor_iso() (in module ilpm.velocity) get_characteristic_velocity() (in module ilpm.velocity) get_device_info() (ilpm.simple_cl.CLSession method) (in module ilpm.simple_cl) get_dissipation_spectrum() (in module ilpm.velocity) get_duidxj_tensor() (in module ilpm.velocity) get_energy() (in module ilpm.velocity) get_energy_spectra_jhtd() (in module ilpm.velocity) get_energy_spectrum() (in module ilpm.velocity) get_energy_spectrum_nd() (in module ilpm.velocity) get_enstrophy() (in module ilpm.velocity) get_epsilon_iso() (in module ilpm.velocity) get_epsilon_using_diss_spectrum() (in module ilpm.velocity) get_epsilon_using_sij() (in module ilpm.velocity) get_epsilon_using_struc_func() (in module ilpm.velocity) get_equally_spaced_grid() (in module ilpm.velocity) get_equally_spaced_kgrid() (in module ilpm.velocity) get_fps() (ilpm.cine.Cine method) get_frame() (ilpm.cine.Cine method) get_hamming_window_radial() (in module ilpm.velocity) get_integral_scale_large_eddy() (in module ilpm.velocity) get_integral_scales() (in module ilpm.velocity) get_integral_scales_all() (in module ilpm.velocity) get_integral_scales_iso_spec() (in module ilpm.velocity)

get_integral_scales_using_rij() (in module ilpm.velocity) get_integral_velocity_scale() (in module ilpm.velocity) get_kolmogorov_scale() (in module ilpm.velocity) get_kolmogorov_scales_all() (in module ilpm.velocity) get_large_scale_vel_field() (in module ilpm.velocity) get_mask_for_unphysical() (in module ilpm.velocity) get_rescaled_dissipation_spectrum() (in module ilpm.velocity) get_rescaled_energy_spectra_jhtd() (in module ilpm.velocity) get_rescaled_energy_spectrum() (in module ilpm.velocity) get_rescaled_energy_spectrum_saddoughi() (in module ilpm.velocity) get_rescaled_structure_function_saddoughi() (in module ilpm.velocity) get_running_avg_1d() (in module ilpm.velocity) get_running_avg_nd() (in module ilpm.velocity) get_sample_turb_field_3d() (in module ilpm.velocity) get_spatial_avg_energy() (in module ilpm.velocity) get_spatial_avg_enstrophy() (in module ilpm.velocity) get_structure_function() (in module ilpm.velocity) get_structure_function_long() (in module ilpm.velocity) get_taylor_microscales() (in module ilpm.velocity) get_taylor_microscales_all() (in module ilpm.velocity) get_taylor_microscales_iso() (in module ilpm.velocity) get_taylor_re() (in module ilpm.velocity) get_time() (ilpm.cine.Cine method) get_time_avg_energy() (in module ilpm.velocity) get_time_avg_enstrophy() (in module ilpm.velocity) get_turbulence_intensity_local() (in module ilpm.velocity) get_turbulence_re() (in module ilpm.velocity) get_two_point_vel_corr_iso() (in module ilpm.velocity) get_window_radial() (in module ilpm.velocity) GroupById (class in ilpm.misc)

H

highlight_bonds() (in module ilpm.networks)

I

ilpm.cine (module) ilpm.colormaps (module) ilpm.dxf (module) ilpm.geometry_extractor (module) ilpm.mesh (module) ilpm.misc (module) ilpm.movies (module) ilpm.networks (module) ilpm.path (module) ilpm.raw (module) ilpm.simple_cl (module) ilpm.vector (module) ilpm.velocity (module) indices_within_r() (ilpm.misc.NeighborList method)

inds_in_polygon() (in module ilpm.networks) inductance_matrix() (ilpm.path.Tangle method) initialize() (ilpm.simple_cl.CLSession method) interpol_meshgrid() (in module ilpm.networks) intersect2d() (in module ilpm.networks) intersection_lines() (in module ilpm.networks) intersection_linesegs() (in module ilpm.networks) invert() (ilpm.mesh.Mesh method) inverted() (ilpm.mesh.Mesh method) is_closed() (ilpm.mesh.Mesh method) is_cyclic_permutation() (in module ilpm.networks) is_cyclic_permutation_numpy() (in module ilpm.networks) is_job_done() (in module ilpm.simple_cl) is_number() (in module ilpm.networks) ismember() (in module ilpm.networks)

K

keep() (ilpm.path.Path method) keys() (ilpm.misc.GroupById method) KL2kL() (in module ilpm.networks)

klonecker_delta() (in module ilpm.velocity) kolmogorov_53() (in module ilpm.velocity) kolmogorov_53_uni() (in module ilpm.velocity)

L

line() (ilpm.dxf.DXF method) line_pts_are_on_lineseg() (in module ilpm.networks) line_pts_are_on_lineseg_2D() (in module ilpm.networks) load() (ilpm.path.Path class method) (ilpm.path.Tangle class method)

load_mesh() (in module ilpm.mesh) load_path() (in module ilpm.path) load_raw() (in module ilpm.raw) load_tangle() (in module ilpm.path) local_memory() (ilpm.simple_cl.CLSession method)

M

mag() (in module ilpm.vector) mag1() (in module ilpm.vector) make_movie() (in module ilpm.movies) mean() (ilpm.path.Path method) (ilpm.path.Tangle method) memberIDs() (in module ilpm.networks) Mesh (class in ilpm.mesh) mesh_tube() (ilpm.path.Path method) (ilpm.path.Tangle method)

MeshWarning message() (ilpm.misc.StatusCounter method) midpoint() (ilpm.path.Path method) midpoint_delta() (in module ilpm.vector) minimum_distance_between_pts() (in module ilpm.networks) minus() (in module ilpm.vector) moment() (ilpm.path.Path method) (ilpm.path.Tangle method) movie_plot_2D() (in module ilpm.networks)

N

natural_sort() (in module ilpm.velocity) NeighborList (class in ilpm.misc) NL2BL() (in module ilpm.networks) NL2BM() (in module ilpm.networks)

NL2NLdict() (in module ilpm.networks) norm() (in module ilpm.vector) normalize_basis() (in module ilpm.vector) NumpyAwareJSONEncoder (class in ilpm.path)

O

ones() (ilpm.simple_cl.CLSession method) ones_like() (ilpm.simple_cl.CLSession method)

orient() (ilpm.path.Path method) (ilpm.path.Tangle method)

P

pairwise() (in module ilpm.networks) parallel_transport_framing() (ilpm.path.Path method) partial_s() (ilpm.path.Path method) Path (class in ilpm.path) PathError PBCmap_for_rectangular_buffer() (in module ilpm.networks) periodic_complex_trace() (in module ilpm.geometry_extractor) periodic_interpolate() (in module ilpm.geometry_extractor) periodic_isosurface() (in module ilpm.geometry_extractor) periodic_label() (in module ilpm.geometry_extractor) periodic_path_unwrap() (in module ilpm.geometry_extractor) periodic_polygon_indices2xy() (in module ilpm.networks) periodic_separate() (ilpm.mesh.Mesh method) perp() (in module ilpm.networks)

plot_preview() (ilpm.dxf.DXF method) plus() (in module ilpm.vector) PLYError point_is_on_linesegment_2D() (in module ilpm.networks) point_is_on_linesegment_2D_singlept() (in module ilpm.networks) polygons2PPC() (in module ilpm.networks) polyline() (ilpm.dxf.DXF method) prepstr() (in module ilpm.networks) print_msg() (ilpm.misc.StatusCounter method) proj() (in module ilpm.vector) pts_are_near_lineseg() (in module ilpm.networks) pts_in_polygon() (in module ilpm.networks) PVxy2PVxydict() (in module ilpm.networks) PVxydict2PVxPVy() (in module ilpm.networks)

R

rankine_vortex_2d() (in module ilpm.velocity) rankine_vortex_line_3d() (in module ilpm.velocity) reduce_by_curvature() (ilpm.path.Path method) (ilpm.path.Tangle method) reduce_topology() (ilpm.path.Tangle method) remove_degenerate_triangles() (ilpm.mesh.Mesh method) remove_nans_for_array_pair() (in module ilpm.velocity) remove_pts() (in module ilpm.networks) resample_with_spacing() (ilpm.path.Path method) (ilpm.path.Tangle method) reynolds_decomposition() (in module ilpm.velocity) rms_radius() (ilpm.path.Path method) (ilpm.path.Tangle method)

rot() (ilpm.path.Path method) (ilpm.path.Tangle method) (in module ilpm.vector) rotate() (ilpm.mesh.Mesh method) rotate_tensor_cartesian() (in module ilpm.networks) rotate_vectors_2D() (in module ilpm.networks) rotated() (ilpm.mesh.Mesh method) rotation_matrix_3D() (in module ilpm.networks) row_is_in_array() (in module ilpm.networks) rows_matching() (in module ilpm.networks) running_mean() (in module ilpm.networks)

S

save() (ilpm.dxf.DXF method) (ilpm.mesh.Mesh method) (ilpm.path.Path method) (ilpm.path.Tangle method) save_pov() (ilpm.mesh.Mesh method) save_raw() (in module ilpm.raw) scale() (ilpm.mesh.Mesh method) (ilpm.path.Path method) (ilpm.path.Tangle method) scale_energy_spectrum() (in module ilpm.velocity) scale_raw_structure_funciton_long() (in module ilpm.velocity) scaled() (ilpm.mesh.Mesh method) seg_length_per_point() (ilpm.path.Path method) separate() (ilpm.mesh.Mesh method) set_default_core_model() (in module ilpm.path)

set_opencl_params() (in module ilpm.geometry_extractor) (in module ilpm.mesh) (in module ilpm.path) setdiff2d() (in module ilpm.networks) setUp() (ilpm.path.TestCases method) (ilpm.raw.TestCases method) ShapeError, [1] ShapeWarning SimpleCLWarning sinc_smooth() (ilpm.path.Path method) (ilpm.path.Tangle method) sort_arrays_by_first_array() (in module ilpm.networks) StatusCounter (class in ilpm.misc) string_sequence_to_numpy_array() (in module ilpm.networks) string_to_array() (in module ilpm.networks) surface_of_revolution() (in module ilpm.mesh)

T

Tangle (class in ilpm.path) tearDown() (ilpm.path.TestCases method) (ilpm.raw.TestCases method) tensor_cartesian2polar2D() (in module ilpm.networks) tensor_polar2cartesian2D() (in module ilpm.networks) tensor_polar2cartesian_tractions() (in module ilpm.networks) TestCases (class in ilpm.misc) (class in ilpm.path) (class in ilpm.raw) (class in ilpm.simple_cl) (class in ilpm.vector) thicken() (ilpm.path.Path method) to_device() (ilpm.simple_cl.CLSession method) to_dict() (ilpm.path.Path method) (ilpm.path.Tangle method) ToDoError, [1] torus_knot() (in module ilpm.path)

total_length() (ilpm.path.Tangle method) total_points() (ilpm.path.Tangle method) translate() (ilpm.mesh.Mesh method) (ilpm.path.Path method) (ilpm.path.Tangle method) translated() (ilpm.mesh.Mesh method) TRI2BL() (in module ilpm.networks) Tri2BL() (in module ilpm.networks) TRI2centroidBL() (in module ilpm.networks) TRI2centroidNLandKL() (in module ilpm.networks) TRI2centroidNLandKLandBL() (in module ilpm.networks) TRI2NLandKL() (in module ilpm.networks) trigger_time_p() (ilpm.cine.Cine property) tune_springs_connecting_regions() (in module ilpm.networks) twist() (ilpm.path.Path method) (ilpm.path.Tangle method) twist_rate() (ilpm.path.Tangle method)

U

unique_rows() (in module ilpm.networks)

unique_rows_threshold() (in module ilpm.networks) update() (ilpm.misc.StatusCounter method)

V

vec() (in module ilpm.vector) volume() (ilpm.mesh.Mesh method)

voronoi_lattice_from_pts() (in module ilpm.networks) voronoi_rect_periodic_from_pts() (in module ilpm.networks)

W

where_points_in_triangle() (in module ilpm.networks)

X

xyandTRI2centroid() (in module ilpm.networks)

Z

zeros() (ilpm.simple_cl.CLSession method)

zeros_like() (ilpm.simple_cl.CLSession method)